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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59708301_59709743_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59708301 - 59709743
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTTGGTT
Flanking Amino Acid:
IVLLMDFDSEIDRVVEELEN
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
93.5
0.98
0.7
92.3
26.6
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029096
59619859 - 59726451
106593