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Intron Name: Anas_platyrhynchos_platyrhynchos_2_59714052_59715244_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59714052 - 59715244

Intron Length:

1193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

TCTATTCATCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ATCTCTTTACTT

Flanking Amino Acid:

NFVEETVYLLSRMGNSRSAL

Intron Amino Acid Position:

668

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

75.1

35.1

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

73.9

0.54

0.9

66.7

39.6

Minor 5ss

37.3

-1.4

2.7

42.3

38.4

Minor BPS

64.5

0.53

1.6

77.48

Associated Gene:

Gene:

VPS41

Ensembl Gene ID:

ENSAPLG00000005152

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029096

59619859 - 59726451

106593

ENSAPLT00000045810

59619859 - 59726451

106593

ENSAPLT00000023716

59619859 - 59726451

106593

ENSAPLT00000044720

59619859 - 59726451

106593

ENSAPLT00000005433

59619859 - 59726726

106868

ENSAPLT00000041406

59623827 - 59726451

102625

ENSAPLT00000030424

59619859 - 59726451

106593

ENSAPLT00000046230

59624004 - 59726451

102448