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Intron Name: Anas_platyrhynchos_platyrhynchos_2_59715386_59716845_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59715386 - 59716845

Intron Length:

1460

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGCAGA

5'SS Class:

major

3'SS Sequence:

TTGGTTTTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATCTTAATT

Flanking Amino Acid:

DLILYSIDKPPFITGLLNNI

Intron Amino Acid Position:

715

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.3

68.9

43.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.8

0.69

0.9

75.8

38.1

Minor 5ss

40.1

-1.1

2.8

47.9

41.4

Minor BPS

81.4

1.06

1.1

92.3

29.9

Associated Gene:

Gene:

VPS41

Ensembl Gene ID:

ENSAPLG00000005152

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029096

59619859 - 59726451

106593

ENSAPLT00000045810

59619859 - 59726451

106593

ENSAPLT00000023716

59619859 - 59726451

106593

ENSAPLT00000044720

59619859 - 59726451

106593

ENSAPLT00000005433

59619859 - 59726726

106868

ENSAPLT00000041406

59623827 - 59726451

102625

ENSAPLT00000030424

59619859 - 59726451

106593

ENSAPLT00000046230

59624004 - 59726451

102448