About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59716983_59723523_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59716983 - 59723523
Intron Length:
6541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCACAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TACTCAATAACT
Flanking Amino Acid:
VKILQDYNLQILLREGCKKI
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
65.1
0.34
0.9
60
35.5
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
60
0.39
1.9
79.79
41.5

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000044720
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625