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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59723624_59724433_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59723624 - 59724433
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
RTQMKGVLVDEENICESCLS
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
69.4
36.6
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
29.3
-2.4
2.8
30.7
37.5
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000044720
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448