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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59724479_59724797_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59724479 - 59724797
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATGGATT
Flanking Amino Acid:
ESCLSPILPSDASKSFNVVV
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
89.6
0.89
0.6
83.8
31.2
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
47.2
-0.1
1.9
69.98
40.9

Associated Gene:

Gene:
VPS41
Ensembl Gene ID:
ENSAPLG00000005152
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029096
59619859 - 59726451
106593
ENSAPLT00000045810
59619859 - 59726451
106593
ENSAPLT00000023716
59619859 - 59726451
106593
ENSAPLT00000044720
59619859 - 59726451
106593
ENSAPLT00000005433
59619859 - 59726726
106868
ENSAPLT00000041406
59623827 - 59726451
102625
ENSAPLT00000030424
59619859 - 59726451
106593
ENSAPLT00000046230
59624004 - 59726451
102448