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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59753590_59807253_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59753590 - 59807253
Intron Length:
53664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGGCC
5'SS Class:
major
3'SS Sequence:
TTTCCCAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTTTCCCAATA
Flanking Amino Acid:
QKRLNRAQEKVLQKLGKADE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
54.9
38.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
72.3
0.5
0.9
67
33
Minor 5ss
24
-3
3.4
33.3
42
Minor BPS
58.5
0.26
1.8
76.03
35.2

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020645
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340
ENSAPLT00000005940
59753521 - 59872860
119340
ENSAPLT00000043373
59753521 - 59872860
119340
ENSAPLT00000030911
59753521 - 59872860
119340