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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59828237_59828621_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59828237 - 59828621
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCACAT
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTTAAAGTGATA
Flanking Amino Acid:
KRKDEGRITKAEEEFQKAQK
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
62.5
43.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
82.5
0.73
0.9
81.2
36.5
Minor 5ss
37.8
-1.4
3.5
56
48.1
Minor BPS
39.6
-0.8
2.3
52.87
39.3

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005940
59753521 - 59872860
119340
ENSAPLT00000043373
59753521 - 59872860
119340
ENSAPLT00000030911
59753521 - 59872860
119340
ENSAPLT00000020645
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340