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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59830503_59831414_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59830503 - 59831414
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGTAAAC
Flanking Amino Acid:
EAKFHKEIALLCHKLYEVMT
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
47
-0.2
2.2
66.09
39.1

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030911
59753521 - 59872860
119340
ENSAPLT00000020645
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340
ENSAPLT00000005940
59753521 - 59872860
119340
ENSAPLT00000043373
59753521 - 59872860
119340