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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59842672_59846405_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59842672 - 59846405
Intron Length:
3734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCTT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTTCTGAGAG
Flanking Amino Acid:
TGVTHSPMSQTLPWDLWTTS
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.4
41.9
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
92.1
0.95
0.6
91.2
20.4
Minor 5ss
56.3
0.21
2.5
76.3
39.1
Minor BPS
52.2
-0
1.9
65.47
42

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005940
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340
ENSAPLT00000043373
59753521 - 59872860
119340
ENSAPLT00000020645
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340