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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59846430_59848042_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59846430 - 59848042
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTTCTATACA
Flanking Amino Acid:
SQTLPWDLWTTSSELVQPAS
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.8
44.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
88.9
0.87
0.8
84.8
29
Minor 5ss
36.1
-1.6
3.2
49.4
46.3
Minor BPS
61.2
0.35
2
78.67
37.8

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020645
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340
ENSAPLT00000005940
59753521 - 59872860
119340
ENSAPLT00000043373
59753521 - 59872860
119340
ENSAPLT00000030911
59753521 - 59872860
119340