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Intron Name: Anas_platyrhynchos_platyrhynchos_2_59852212_59854308_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

59852212 - 59854308

Intron Length:

2097

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

AATAAAACAAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

GTCTACTTAAAA

Flanking Amino Acid:

QSNENVTETLTEAEEAPPGE

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

77.9

36.8

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

46.1

-0.2

1.1

37.1

37.6

Minor 5ss

34.5

-1.8

3.3

46.4

44.2

Minor BPS

63.3

0.41

1.6

70.76

40.8

Associated Gene:

Gene:

AMPH

Ensembl Gene ID:

ENSAPLG00000005709

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030911

59753521 - 59872860

119340

ENSAPLT00000017702

59753521 - 59872860

119340

ENSAPLT00000005940

59753521 - 59872860

119340

ENSAPLT00000047161

59753521 - 59872860

119340

ENSAPLT00000043373

59753521 - 59872860

119340