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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59854426_59865170_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59854426 - 59865170
Intron Length:
10745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GTGTCCTGAAAG
Flanking Amino Acid:
EPAKPAEQAAVVTAVEGTAA
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.2
33
Major BPS
69.6
0.49
1
59.5
39
Major PPT
78
0.63
0.9
72.3
36.8
Minor 5ss
28
-2.5
3.1
35.2
41.4
Minor BPS
59.2
0.15
1.7
62.83
44.3

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005940
59753521 - 59872860
119340