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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59856752_59861425_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59856752 - 59861425
Intron Length:
4674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCCTCTTTATGC
Flanking Amino Acid:
TSSPYDNIHKDSVEAGDKET
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.2
39.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.7
0.69
0.8
76.4
31.1
Minor 5ss
35.7
-1.6
3.3
49
41.4
Minor BPS
50.7
0
1.9
61.09
45

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000030911
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340