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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59861483_59865170_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59861483 - 59865170
Intron Length:
3688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATATG
5'SS Class:
major
3'SS Sequence:
CTGTTATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GTGTCCTGAAAG
Flanking Amino Acid:
TTGVAEKEREVVTAVEGTAA
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
75.3
40.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
78
0.63
0.9
72.3
36.8
Minor 5ss
37.6
-1.4
3.1
50.7
45.8
Minor BPS
59.2
0.15
1.7
62.83
44.3

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043373
59753521 - 59872860
119340
ENSAPLT00000030911
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340