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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59865318_59867244_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59865318 - 59867244
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTGTTT
Flanking Amino Acid:
GEEKEADASQEKVSSIPSVV
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
77.9
38.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80
0.67
0.8
73.8
36.8
Minor 5ss
41.4
-1
3
58.6
45.9
Minor BPS
49.4
0.03
3.5
86.34
34.1

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030911
59753521 - 59872860
119340
ENSAPLT00000020645
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340
ENSAPLT00000005940
59753521 - 59872860
119340
ENSAPLT00000043373
59753521 - 59872860
119340