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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59869390_59872752_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59869390 - 59872752
Intron Length:
3363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
VIPSETTADQEAGWLTGIKE
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
92.5
0.96
0.6
87.6
22.8
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
AMPH
Ensembl Gene ID:
ENSAPLG00000005709
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030911
59753521 - 59872860
119340
ENSAPLT00000020645
59753521 - 59872860
119340
ENSAPLT00000047161
59753521 - 59872860
119340
ENSAPLT00000017702
59753521 - 59872860
119340
ENSAPLT00000044197
59753521 - 59872860
119340
ENSAPLT00000005940
59753521 - 59872860
119340
ENSAPLT00000043373
59753521 - 59872860
119340