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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_59990187_59990432_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59990187 - 59990432
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TTCGTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
TCTTTCGTATTT
Flanking Amino Acid:
DLKEAMKRGEKHGLVIIPDG
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
65.3
46
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
83.7
0.76
0.8
81.1
35.6
Minor 5ss
39.7
-1.2
2.8
50
46.3
Minor BPS
49.8
0.07
2.2
74.56
43.3

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034317
59985535 - 60029710
44176
ENSAPLT00000047340
59985535 - 60029710
44176
ENSAPLT00000028631
59985535 - 60029710
44176
ENSAPLT00000044323
59985535 - 60029710
44176
ENSAPLT00000023982
59985535 - 60029710
44176
ENSAPLT00000038165
59983749 - 60029710
45962
ENSAPLT00000010917
59985535 - 60029710
44176
ENSAPLT00000037389
59985535 - 60029710
44176