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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60004607_60007887_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60004607 - 60007887
Intron Length:
3281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTATCT
Flanking Amino Acid:
RASSIRSSPVSSDISDQSET
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
79.6
35.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
77.4
0.62
1
79.3
32.7
Minor 5ss
40
-1.1
3.1
54.5
43.9
Minor BPS
78.7
0.98
1.5
91.83
37.8

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023982
59985535 - 60029710
44176
ENSAPLT00000038165
59983749 - 60029710
45962
ENSAPLT00000017864
59985535 - 60029710
44176
ENSAPLT00000034317
59985535 - 60029710
44176
ENSAPLT00000010917
59985535 - 60029710
44176
ENSAPLT00000028631
59985535 - 60029710
44176
ENSAPLT00000026491
59985535 - 60029710
44176