About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60007945_60020430_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60007945 - 60020430
Intron Length:
12486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTGTAA
5'SS Class:
major
3'SS Sequence:
AACTTCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCCATCATAACT
Flanking Amino Acid:
MRELERQQKEPSEYSWYSSR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
64.7
37.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
73.6
0.53
0.8
70.8
35.1
Minor 5ss
34.7
-1.7
3.5
46.2
49
Minor BPS
57.6
0.32
1.7
72.98
43.8

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017864
59985535 - 60029710
44176