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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60009636_60011799_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60009636 - 60011799
Intron Length:
2164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
CTTCACATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TATTCTTCACAT
Flanking Amino Acid:
KTAYSRKDFLSSSLYSDPVA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
72.6
39.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
77
0.61
0.9
69.4
35.2
Minor 5ss
41.2
-1
3.1
56
42.7
Minor BPS
52
0.14
1.9
74.74
41.8

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028631
59985535 - 60029710
44176