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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60010179_60011799_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60010179 - 60011799
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
KTAYSRKDFLSGLYHDQRNY
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
72.6
39.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.2
0.86
0.6
84.1
24.1
Minor 5ss
41.2
-1
3.1
56
42.7
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038165
59983749 - 60029710
45962
ENSAPLT00000023982
59985535 - 60029710
44176
ENSAPLT00000010917
59985535 - 60029710
44176