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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60010179_60014856_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60010179 - 60014856
Intron Length:
4678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
TSTSRRRDLVSGLYHDQRNY
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
66.7
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.2
0.86
0.6
84.1
24.1
Minor 5ss
36.9
-1.5
2.6
42.1
39.8
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034317
59985535 - 60029710
44176