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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60011866_60012798_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
60011866 - 60012798
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGTTAA
5'SS Class:
weak_major
3'SS Sequence:
ATTTTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTCTAAATT
Flanking Amino Acid:
KDRSTRYSVPSHAYSECHST
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
66.2
35.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.7
0.67
0.8
78.5
34.3
Minor 5ss
48.5
-0.1
2.5
67
44.2
Minor BPS
70.4
0.72
1.6
85.57
35

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023982
59985535 - 60029710
44176
ENSAPLT00000038165
59983749 - 60029710
45962
ENSAPLT00000028631
59985535 - 60029710
44176