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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60011866_60014856_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60011866 - 60014856
Intron Length:
2991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGTAGC
5'SS Class:
major
3'SS Sequence:
ATTTTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTCTAAATT
Flanking Amino Acid:
TSTSRRRDLVSHAYSECHST
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
66.7
38.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.7
0.67
0.8
78.5
34.3
Minor 5ss
36.9
-1.5
2.6
42.1
39.8
Minor BPS
70.4
0.72
1.6
85.57
35

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010917
59985535 - 60029710
44176