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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60014923_60016646_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60014923 - 60016646
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCGTTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTATTTTGATT
Flanking Amino Acid:
SHRSSRHSYLSPLDISGSHR
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
66.1
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.5
0.57
1
79.5
32.8
Minor 5ss
39.8
-1.1
3.1
50.4
40.6
Minor BPS
62.3
0.47
1.2
75.52
35.3

Associated Gene:

Gene:
LRRFIP2
Ensembl Gene ID:
ENSAPLG00000010430
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034317
59985535 - 60029710
44176
ENSAPLT00000028631
59985535 - 60029710
44176
ENSAPLT00000023982
59985535 - 60029710
44176
ENSAPLT00000010917
59985535 - 60029710
44176
ENSAPLT00000038165
59983749 - 60029710
45962