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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60061053_60068822_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60061053 - 60068822
Intron Length:
7770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCTGA
5'SS Class:
major
3'SS Sequence:
CATTGAATGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTGAAT
Flanking Amino Acid:
DESSLTPDKELLAGMIAEPA
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
65.9
42.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
61.3
0.26
1.1
54.8
43.6
Minor 5ss
38.6
-1.3
2.9
48.1
47.4
Minor BPS
59
0.36
1.9
81.72
39.6

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000010647
60058412 - 60115611
57200
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000028852
60058412 - 60123842
65431