Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60061705_60072959_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

60061705 - 60072959

Intron Length:

11255

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCCTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TTCCTTCTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.5

1.07

0.7

84.1

30.2

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

81.6

0.71

0.7

74.4

30.8

Minor 5ss

39.6

-1.2

2.8

49.9

46.3

Minor BPS

56.2

0.19

1.7

68.77

37.7

Associated Gene:

Gene:

GOLGA4

Ensembl Gene ID:

ENSAPLG00000010196

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037791

60061577 - 60118123

56547