About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60073026_60073990_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60073026 - 60073990
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTATG
5'SS Class:
major
3'SS Sequence:
TGGGTTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
GCACAAGTAACT
Flanking Amino Acid:
NNGSEPASPQPSDAQSFAQR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
72.9
44.2
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
43.8
-0.7
2.9
59.8
44.7
Minor BPS
41.5
-0.5
2.3
57.66
44.1

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000039942
60060957 - 60123842
62886
ENSAPLT00000028852
60058412 - 60123842
65431
ENSAPLT00000037791
60061577 - 60118123
56547
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000010647
60058412 - 60115611
57200
ENSAPLT00000030493
60058412 - 60123842
65431