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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60073611_60073990_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
60073611 - 60073990
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGGGTTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
GCACAAGTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
71.2
34.5
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
30.8
-2.2
2.9
35.8
34.5
Minor BPS
41.5
-0.5
2.3
57.66
44.1

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038625
60072960 - 60123842
50883