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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60077461_60080338_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60077461 - 60080338
Intron Length:
2878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTATGATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTATGATT
Flanking Amino Acid:
ALRRIAELREELQMDQQAKK
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
100
1.24
0.5
100
0
Major PPT
72.5
0.51
0.9
70.5
40
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
62.2
0.47
1.5
82.94
31.9

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000038625
60072960 - 60123842
50883
ENSAPLT00000028852
60058412 - 60123842
65431
ENSAPLT00000037791
60061577 - 60118123
56547
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000010647
60058412 - 60115611
57200
ENSAPLT00000030493
60058412 - 60123842
65431
ENSAPLT00000039942
60060957 - 60123842
62886