About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60080438_60080946_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60080438 - 60080946
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATATTTTTAACA
Flanking Amino Acid:
DQLISVLQTQVSLLKQRLQN
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.4
0.55
1
73.7
41.5
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
76
0.81
1.1
78.1
31.8

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000010647
60058412 - 60115611
57200
ENSAPLT00000030493
60058412 - 60123842
65431
ENSAPLT00000039942
60060957 - 60123842
62886
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000038625
60072960 - 60123842
50883
ENSAPLT00000028852
60058412 - 60123842
65431
ENSAPLT00000037791
60061577 - 60118123
56547