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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60082657_60083710_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60082657 - 60083710
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTCTTGTGATT
Flanking Amino Acid:
ERLQELEKMKDLHMAEKTKL
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
45.4
-0.2
1.9
61.09
37.5

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000038625
60072960 - 60123842
50883
ENSAPLT00000028852
60058412 - 60123842
65431
ENSAPLT00000037791
60061577 - 60118123
56547
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000010647
60058412 - 60115611
57200
ENSAPLT00000030493
60058412 - 60123842
65431
ENSAPLT00000039942
60060957 - 60123842
62886