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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6010501_6013404_F

Intron Information:

Intron Rank:
132909
Intron Class:
major
Intron Phase:
Intron Coordinates:
6010501 - 6013404
Intron Length:
2904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATC
5'SS Class:
major
3'SS Sequence:
CCCTCTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTCCCTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.3
37.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.3
0.39
0.9
62.1
32
Minor 5ss
35.3
-1.7
2.9
45.6
42.6
Minor BPS
54.9
0.15
1.9
69.55
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021513
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043985
6010373 - 6022035
11663