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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60108459_60109818_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60108459 - 60109818
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
GTTGTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCCTCTAATT
Flanking Amino Acid:
AEEEHRNHENVTIAELKAQL
Intron Amino Acid Position:
2190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
62
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
74.2
0.54
1
65.8
45.3
Minor 5ss
39.1
-1.2
3
45.6
43.3
Minor BPS
67.4
0.63
1.6
86.17
33.5

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000037791
60061577 - 60118123
56547
ENSAPLT00000010647
60058412 - 60115611
57200
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000030493
60058412 - 60123842
65431
ENSAPLT00000039942
60060957 - 60123842
62886
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000038625
60072960 - 60123842
50883