About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60112580_60115489_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60112580 - 60115489
Intron Length:
2910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCCCAT
U12 Branch Point Sequence:
TCTTCCTTGGCA
Flanking Amino Acid:
FEYMMGRETKVQWNEIRWHA
Intron Amino Acid Position:
2280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
49.3
-0
1.3
58.2
40.4
Major PPT
79.4
0.66
0.9
76.6
32
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
50.3
0
3.5
78.22
38.8

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010647
60058412 - 60115611
57200