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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60112580_60117703_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60112580 - 60117703
Intron Length:
5124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATGAAATTGATT
Flanking Amino Acid:
FEYMMGRETKTMAKVITTVL
Intron Amino Acid Position:
2236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.6
0.67
0.9
77.7
36.7
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
46.9
-0.1
1.8
64.26
40

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028852
60058412 - 60123842
65431
ENSAPLT00000037791
60061577 - 60118123
56547
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000030493
60058412 - 60123842
65431
ENSAPLT00000039942
60060957 - 60123842
62886
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000038625
60072960 - 60123842
50883