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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60117791_60120547_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60117791 - 60120547
Intron Length:
2757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGGCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAT
U12 Branch Point Sequence:
AGTCCAATAAGC
Flanking Amino Acid:
ILEREDARPLFASPRGGIF*
Intron Amino Acid Position:
2302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
56.3
0.16
1
62.9
34.3
Major PPT
71.6
0.49
0.9
65
36.3
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
44.8
-0.4
2.1
57.86
39.9

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000028852
60058412 - 60123842
65431
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000030493
60058412 - 60123842
65431