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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60117791_60123260_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60117791 - 60123260
Intron Length:
5470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
ILEREDARPLSWLRPS*
Intron Amino Acid Position:
2265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038625
60072960 - 60123842
50883
ENSAPLT00000028431
60058412 - 60123842
65431
ENSAPLT00000039942
60060957 - 60123842
62886