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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60120612_60123260_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
60120612 - 60123260
Intron Length:
2649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
GOLGA4
Ensembl Gene ID:
ENSAPLG00000010196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029883
60058412 - 60123842
65431
ENSAPLT00000028852
60058412 - 60123842
65431
ENSAPLT00000034480
60058412 - 60123842
65431
ENSAPLT00000030493
60058412 - 60123842
65431