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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60139458_60146945_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60139458 - 60146945
Intron Length:
7488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTGAAATTAATC
Flanking Amino Acid:
VLQHYHDSTRWVLVGAPKAD
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79
0.65
1
69.2
46.1
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
48
-0.1
1.8
57.2
41.4

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022219
60138664 - 60341970
203307
ENSAPLT00000047763
60138664 - 60345030
206367
ENSAPLT00000022111
60138664 - 60341624
202961
ENSAPLT00000042496
60138664 - 60367056
228393
ENSAPLT00000009697
60138664 - 60368013
229350
ENSAPLT00000038537
60138664 - 60367056
228393
ENSAPLT00000027172
60138664 - 60345030
206367