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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_601460_603183_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
601460 - 603183
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TCTCTCACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.2
0.57
0.8
67.1
33.9
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SNAP47
Ensembl Gene ID:
ENSAPLG00000005035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048243
583833 - 605080
21248
ENSAPLT00000021667
583315 - 603941
20627