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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_601460_604262_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
601460 - 604262
Intron Length:
2803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.2
0.57
0.8
67.1
33.9
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SNAP47
Ensembl Gene ID:
ENSAPLG00000005035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042628
583833 - 605080
21248
ENSAPLT00000037658
589924 - 605080
15157
ENSAPLT00000034054
583315 - 605080
21766