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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60167345_60170428_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60167345 - 60170428
Intron Length:
3084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTTTCCTCACCC
Flanking Amino Acid:
QAGIAGFFTEELVIMGAPGS
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
81.2
0.7
0.8
77
31.6
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
61.7
0.35
1.9
74.56
42.5

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027172
60138664 - 60345030
206367
ENSAPLT00000022219
60138664 - 60341970
203307
ENSAPLT00000047763
60138664 - 60345030
206367
ENSAPLT00000022111
60138664 - 60341624
202961
ENSAPLT00000042496
60138664 - 60367056
228393
ENSAPLT00000009697
60138664 - 60368013
229350
ENSAPLT00000038537
60138664 - 60367056
228393