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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60174963_60178185_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60174963 - 60178185
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GGCTTGGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTGTTGTGACT
Flanking Amino Acid:
VKIFQASGKKMGSYFGSSLC
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
68.5
0.42
1.1
60.1
45
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
50.9
0.11
2.1
77.64
39.7

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027172
60138664 - 60345030
206367
ENSAPLT00000022219
60138664 - 60341970
203307
ENSAPLT00000022111
60138664 - 60341624
202961
ENSAPLT00000047763
60138664 - 60345030
206367
ENSAPLT00000009697
60138664 - 60368013
229350
ENSAPLT00000042496
60138664 - 60367056
228393