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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60180972_60182344_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60180972 - 60182344
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTATCATCT
Flanking Amino Acid:
LGDIDDDGFPDVAIGAPKED
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
75
35.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84.6
0.78
0.8
78.8
33.2
Minor 5ss
28.4
-2.5
2.9
33.4
41.6
Minor BPS
48.8
-0
2
74.12
42.3

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027172
60138664 - 60345030
206367
ENSAPLT00000022219
60138664 - 60341970
203307
ENSAPLT00000047763
60138664 - 60345030
206367
ENSAPLT00000022111
60138664 - 60341624
202961
ENSAPLT00000042496
60138664 - 60367056
228393
ENSAPLT00000009697
60138664 - 60368013
229350
ENSAPLT00000038537
60138664 - 60367056
228393