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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60186138_60186661_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
60186138 - 60186661
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ACAAAAATTTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCCCTTTTAACT
Flanking Amino Acid:
GVDMDGNGYPDMTVGAFLSD
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
59.3
0.21
1.1
52.6
45
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
68.2
0.65
1.3
76.22
41

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022219
60138664 - 60341970
203307
ENSAPLT00000047763
60138664 - 60345030
206367
ENSAPLT00000022111
60138664 - 60341624
202961
ENSAPLT00000042496
60138664 - 60367056
228393
ENSAPLT00000009697
60138664 - 60368013
229350
ENSAPLT00000038537
60138664 - 60367056
228393
ENSAPLT00000027172
60138664 - 60345030
206367