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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60314483_60317733_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60314483 - 60317733
Intron Length:
3251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTGTGTTTATTT
Flanking Amino Acid:
ETLTFLVTAQSGNLEHTEFL
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.3
0.44
1
63.8
41.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
49.1
0.01
2
67.82
43.9

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027172
60138664 - 60345030
206367
ENSAPLT00000022219
60138664 - 60341970
203307
ENSAPLT00000022111
60138664 - 60341624
202961
ENSAPLT00000042496
60138664 - 60367056
228393
ENSAPLT00000009697
60138664 - 60368013
229350
ENSAPLT00000038537
60138664 - 60367056
228393