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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60314483_60320300_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60314483 - 60320300
Intron Length:
5818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTTTCTTGATCT
Flanking Amino Acid:
ETLTFLVTAQREVFPTSFFY
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80.9
0.7
0.9
77.2
36.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
62.6
0.47
1.7
81.71
39.7

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047763
60138664 - 60345030
206367