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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60323271_60338131_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60323271 - 60338131
Intron Length:
14861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATTCAGAATA
Flanking Amino Acid:
AEIFHVQQMMVGQDKGNCSF
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
80
0.75
1
78.6
31
Major PPT
77.4
0.62
1
70.1
40.8
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
50.1
-0
1.7
63.32
36.3

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022219
60138664 - 60341970
203307
ENSAPLT00000047763
60138664 - 60345030
206367
ENSAPLT00000022111
60138664 - 60341624
202961
ENSAPLT00000042496
60138664 - 60367056
228393
ENSAPLT00000009697
60138664 - 60368013
229350
ENSAPLT00000038537
60138664 - 60367056
228393
ENSAPLT00000027172
60138664 - 60345030
206367